TSS: Rfhg 134769.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000379472.4:0 ENST00000675775.1:0 ENST00000265969.8:0 ENST00000640909.2:0 ENST00000640318.2:0 ENST00000639325.2:0 NM_001112741.2:0 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_004976 | |nearest_promoter_id=NM_004976 | ||
|nearest_refseq=NM_004976 | |nearest_refseq=NM_004976 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.552896 | |nearest_unigene=Hs.552896 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000379472.4 ENST00000675775.1 ENST00000265969.8 ENST00000640909.2 ENST00000640318.2 ENST00000639325.2 | |transcript_name=ENST00000379472.4 ENST00000675775.1 ENST00000265969.8 ENST00000640909.2 ENST00000640318.2 ENST00000639325.2 NM_001112741.2 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_134769.1 | |tss_id=rfhg_134769.1 | ||
Revision as of 16:01, 7 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2428625,EH38E1524863) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1172 |
|---|---|
| Nearest PromoterID: | NM_004976 |
| Entrez ID: | 3746 |
| Nearest Unigene: | Hs.552896 |
| Nearest Refseq: | NM_004976 |
| Nearest Ensembl: | ENSG00000129159 |
| Gene Name: | KCNC1 |
| Gene Alias: | EPM7|KV3.1|KV4|NGK2 |
| Gene Type: | protein-coding |
| CpG%: | 0.206897 |
| GC%: | 0.784091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.