TSS: Rfhg 135672.1: Difference between revisions

Revision as of 16:55, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_135672.1
Species:	human
Chr:	chr11

Start:	34052095
End:	34052109
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2440092,EH38E1531633)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	MN309343:-5
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000664488.1:-23

Gene_name:	CAPRIN1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	371
Nearest PromoterID:	NM_203364
Entrez ID:	4076
Nearest Unigene:	Hs.471818
Nearest Refseq:	NM_005898
Nearest Ensembl:	ENSG00000135387
Gene Name:	CAPRIN1
Gene Alias:	GPIAP1\|GPIP137\|GRIP137\|M11S1\|RNG105\|p137GPI
Gene Type:	protein-coding
CpG%:	0.071429
GC%:	0.733333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=MN309343:-5 ENST00000664488.1:-23
 |annotation=intron (NM_005898, intron 1 of 18)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_203364
 |nearest_refseq=NM_005898
+|nearest_transcripts=ENST00000664488.1:-23
 |nearest_unigene=Hs.471818
 |peak_score=1