TSS: Rfhg 136167.1: Difference between revisions

Revision as of 17:18, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_136167.1
Species:	human
Chr:	chr11

Start:	43579146
End:	43579168
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2446325,EH38E1535241)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000637980.1:27
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000532864.6:-257

Gene_name:	MIR129-2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-2237
Nearest PromoterID:	NR_029697
Entrez ID:	406918
Nearest Unigene:
Nearest Refseq:	NR_029697
Nearest Ensembl:	ENSG00000199077
Gene Name:	MIR129-2
Gene Alias:	MIR-129b\|MIRN129-2\|mir-129-2
Gene Type:	ncRNA
CpG%:	0.090909
GC%:	0.652174
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000637980.1:27 ENST00000532864.6:-257
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_029697
 |nearest_refseq=NR_029697
+|nearest_transcripts=ENST00000532864.6:-257
 |nearest_unigene=
 |peak_score=1