TSS: Rfhg 136752.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000529276.1:0 ENST00000528192.5:0 ENST00000530295.5:0 ENST00000534208.5:0 ENST00000534716.2:0 ENST00000263774.9:0 ENST00000533105.1:0 NM_004551.3:0 BC000617:0 AK313802:0 AK223255:0 AF067139:0 AF100743:0 AK294167:0 DQ895121:1 KJ891680:1 KR710624:1 KR710625:1 KR710626:1 DQ891934:1 ENST00000524568.1:9 ENST00000677462.1:33 ENST00000678975.1:38 ENST00000531351.2:49
|annotation=promoter-TSS (NM_004551)
|annotation=promoter-TSS (NM_004551)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_004551
|nearest_promoter_id=NM_004551
|nearest_refseq=NM_004551
|nearest_refseq=NM_004551
|nearest_transcripts=DQ895121:1 KJ891680:1 KR710624:1 KR710625:1 KR710626:1 DQ891934:1 ENST00000524568.1:9 ENST00000677462.1:33 ENST00000678975.1:38 ENST00000531351.2:49
|nearest_unigene=Hs.502528
|nearest_unigene=Hs.502528
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000529276.1 ENST00000528192.5 ENST00000530295.5 ENST00000534208.5 ENST00000534716.2 ENST00000263774.9 ENST00000533105.1 BC000617 AK313802 AK223255 AF067139 AF100743 AK294167
|transcript_name=ENST00000529276.1 ENST00000528192.5 ENST00000530295.5 ENST00000534208.5 ENST00000534716.2 ENST00000263774.9 ENST00000533105.1 NM_004551.3 BC000617 AK313802 AK223255 AF067139 AF100743 AK294167
|tss_cluster_detected=15
|tss_cluster_detected=15
|tss_id=rfhg_136752.1
|tss_id=rfhg_136752.1

Revision as of 17:45, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_136752.1
TSS ID(Version3):hg_114228.1
hg_233013.1
Species:human
Chr:chr11
Start:47579010
End:47579090
Strand:+
Source datasetsFANTOM5|DBTSS|DRA000914|ENCODE|RAMPAGE|PRJNA548673
|PRJNA401781|PRJNA4843412|DRA013844|PRJNA615891|PRJNA597322
ProtocolCAGE|TSS-seq|RAMPAGE|ReCappable-seq|oligo_capping|NETCAGE
|SLIC_CAGE|STRIPE-seq|TIF-seq2
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2450440,EH38E1538351)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000529276.1:0
ENST00000528192.5:0
ENST00000530295.5:0
ENST00000534208.5:0
ENST00000534716.2:0
ENST00000263774.9:0
ENST00000533105.1:0
NM_004551.3:0
BC000617:0
AK313802:0
AK223255:0
AF067139:0
AF100743:0
AK294167:0
GeneID:4722
HGNC/MGI_ID:HGNC:7710
UniProt_ID:E9PJE7 E9PKL8 E9PS48 G3V194 O75489 Q53FM7
Nearer transcript ids and distances:
  • DQ895121:1
  • KJ891680:1
  • KR710624:1
  • KR710625:1
  • KR710626:1
  • DQ891934:1
  • ENST00000524568.1:9
  • ENST00000677462.1:33
  • ENST00000678975.1:38
  • ENST00000531351.2:49
view more...
Gene_name:NDUFS3
Gene_symbol:NDUFS3
Gene_synonyms:CI-30
Gene_source:HGNC:7710



TATA-Box annotation

Distance to TSS:-24
Nearest PromoterID:NM_004551
Entrez ID:4722
Nearest Unigene:Hs.502528
Nearest Refseq:NM_004551
Nearest Ensembl:ENSG00000213619
Gene Name:NDUFS3
Gene Alias:CI-30|MC1DN8
Gene Type:protein-coding
CpG%:0.075000
GC%:0.592593
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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