TSS: Rfhg 138013.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000398922.6:0 ENST00000532971.2:0 ENST00000529868.1:0 NM_001043229.2:0 AK297138:0 BC041359:0 LF344776:11 MA580353:11 ENST00000594728.1:14 NR_004390.1:100 LP896820:100 LF344777:-234 MA580354:-234 LF211233:-354 MA446810:-354 LF383494:-399 MA619071:-399 BC147001:420 BC147011:420 BC171895:420 | |||
|annotation=promoter-TSS (NR_104414) | |annotation=promoter-TSS (NR_104414) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001043229 | |nearest_promoter_id=NM_001043229 | ||
|nearest_refseq=NM_001043229 | |nearest_refseq=NM_001043229 | ||
|nearest_transcripts=LF344776:11 MA580353:11 ENST00000594728.1:14 NR_004390.1:100 LP896820:100 LF344777:-234 MA580354:-234 LF211233:-354 MA446810:-354 LF383494:-399 MA619071:-399 BC147001:420 BC147011:420 BC171895:420 | |||
|nearest_unigene=Hs.640726 | |nearest_unigene=Hs.640726 | ||
|peak_score=1 | |peak_score=1 | ||
Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000398922.6 ENST00000532971.2 ENST00000529868.1 AK297138 BC041359 | |transcript_name=ENST00000398922.6 ENST00000532971.2 ENST00000529868.1 NM_001043229.2 AK297138 BC041359 | ||
|tss_cluster_detected=10 | |tss_cluster_detected=10 | ||
|tss_id=rfhg_138013.1 | |tss_id=rfhg_138013.1 |
Revision as of 18:47, 7 November 2024
Basic information about the TSS
|
| |||||||||||||
Source datasets | PRJNA401781|PRJNA597322|PRJNA4843412|DRA013844|PRJNA548673 |PRJNA615891 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | oligo_capping|CAGE|RAMPAGE|STRIPE-seq|NETCAGE |ReCappable-seq|SLIC_CAGE|TIF-seq2 | |||||||||||||
TSS cluster detected* | 10 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2456700,EH38E1542769) |
---|---|
Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 2 |
---|---|
Nearest PromoterID: | NM_001043229 |
Entrez ID: | 751071 |
Nearest Unigene: | Hs.640726 |
Nearest Refseq: | NM_001043229 |
Nearest Ensembl: | ENSG00000214756 |
Gene Name: | CSKMT |
Gene Alias: | CS-KMT|METTL12|U99HG |
Gene Type: | protein-coding |
CpG%: | 0.062500 |
GC%: | 0.705882 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.