TSS: Rfhg 138467.1: Difference between revisions

Revision as of 19:14, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_138467.1
Species:	human
Chr:	chr11

Start:	64248646
End:	64248679
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2458162,EH38E1543924)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF344619:319 MA580196:319
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PPP1R14B-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1608
Nearest PromoterID:	NR_135086
Entrez ID:	105369340
Nearest Unigene:	Hs.697228
Nearest Refseq:	NR_135086
Nearest Ensembl:	ENSG00000256940
Gene Name:	PPP1R14B-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.588235
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF344619:319 MA580196:319
 |annotation=TTS (NR_135086)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_135086
 |nearest_refseq=NR_135086
+|nearest_transcripts=
 |nearest_unigene=Hs.697228
 |peak_score=1