TSS: Rfhg 138611.1: Difference between revisions

Revision as of 19:22, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_138611.1
Species:	human
Chr:	chr11

Start:	64744437
End:	64744451
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2458792,EH38E1544380)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF344573:-5 MA580150:-5
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF344574:115 MA580151:115 ENST00000419843.1:120 ENST00000394430.5:-138 AK124023:-138 ENST00000377486.7:292 ENST00000394432.8:295 NM_001098671.2:295 NM_001318398.2:295 ENST00000421556.5:315 AK122694:315 ENST00000431822.5:319 AF081194:347 U78170:347 LF344572:-354 MA580149:-354 NM_001098670.2:-375 ENST00000441258.5:-380 BC110306:-380 ENST00000377497.7:-383 LF211198:-391 MA446775:-391 ENST00000377487.5:-408 ENST00000480443.1:-409 ENST00000430645.1:-416 view more...

Gene_name:	RASGRP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-302
Nearest PromoterID:	NM_001318398
Entrez ID:	10235
Nearest Unigene:	Hs.99491
Nearest Refseq:	NM_005825
Nearest Ensembl:	ENSG00000068831
Gene Name:	RASGRP2
Gene Alias:	CALDAG-GEFI\|CDC25L
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.466667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "LF344574:115 MA580151:115 ENST00000419843.1:120 ENST00000394430.5:-138 AK124023:-138 ENST00000377486.7:292 ENST00000394432.8:295 NM_001098671.2:295 NM_001318398.2:295 ENST00000421556.5:315 AK122694:315 ENST00000431822.5:319 AF081194:347 U78170:347 LF344572:-354 MA580149:-354 NM_001098670.2:-375 ENST00000441258.5:-380 BC110306:-380 ENST00000377497.7:-383 LF211198:-391 MA446775:-391 ENST00000377487.5:-408 ENST00000480443.1:-409 ENST00000430645.1:-416" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF344573:-5 MA580150:-5 LF344574:115 MA580151:115 ENST00000419843.1:120 ENST00000394430.5:-138 AK124023:-138 ENST00000377486.7:292 ENST00000394432.8:295 NM_001098671.2:295 NM_001318398.2:295 ENST00000421556.5:315 AK122694:315 ENST00000431822.5:319 AF081194:347 U78170:347 LF344572:-354 MA580149:-354 NM_001098670.2:-375 ENST00000441258.5:-380 BC110306:-380 ENST00000377497.7:-383 LF211198:-391 MA446775:-391 ENST00000377487.5:-408 ENST00000480443.1:-409 ENST00000430645.1:-416
 |annotation=promoter-TSS (NM_001318398)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001318398
 |nearest_refseq=NM_005825
+|nearest_transcripts=LF344574:115 MA580151:115 ENST00000419843.1:120 ENST00000394430.5:-138 AK124023:-138 ENST00000377486.7:292 ENST00000394432.8:295 NM_001098671.2:295 NM_001318398.2:295 ENST00000421556.5:315 AK122694:315 ENST00000431822.5:319 AF081194:347 U78170:347 LF344572:-354 MA580149:-354 NM_001098670.2:-375 ENST00000441258.5:-380 BC110306:-380 ENST00000377497.7:-383 LF211198:-391 MA446775:-391 ENST00000377487.5:-408 ENST00000480443.1:-409 ENST00000430645.1:-416
 |nearest_unigene=Hs.99491
 |peak_score=1