TSS: Rfhg 139588.1: Difference between revisions

Revision as of 20:15, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_139588.1
TSS ID(Version3):	hg_120698.1 hg_120699.1
Species:	human
Chr:	chr11

Start:	65856041
End:	65856093
Strand:	-

Source datasets

Protocol

CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE

TSS cluster detected^*

7

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2460237,EH38E1545608)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF372223:19 MA607800:19
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC024975:27 LF372221:-104 MA607798:-104 U21909:-150 D00682:-150 KJ890901:-150 KJ896591:-150 BT006846:-150 DQ891769:-150 EU176624:-150 EU794603:-150 AB590274:-150 LF372225:366 MA607802:366 ENST00000530413.1:-380 view more...

Gene_name:	CFL1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2113
Nearest PromoterID:	NM_005507
Entrez ID:	1072
Nearest Unigene:	Hs.170622
Nearest Refseq:	NM_005507
Nearest Ensembl:	ENSG00000172757
Gene Name:	CFL1
Gene Alias:	CFL\|HEL-S-15\|cofilin
Gene Type:	protein-coding
CpG%:	0.076923
GC%:	0.660377
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF372223:19 MA607800:19 BC024975:27 LF372221:-104 MA607798:-104 U21909:-150 D00682:-150 KJ890901:-150 KJ896591:-150 BT006846:-150 DQ891769:-150 EU176624:-150 EU794603:-150 AB590274:-150 LF372225:366 MA607802:366 ENST00000530413.1:-380
 |annotation=exon (NM_005507, exon 2 of 4)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005507
 |nearest_refseq=NM_005507
+|nearest_transcripts=BC024975:27 LF372221:-104 MA607798:-104 U21909:-150 D00682:-150 KJ890901:-150 KJ896591:-150 BT006846:-150 DQ891769:-150 EU176624:-150 EU794603:-150 AB590274:-150 LF372225:366 MA607802:366 ENST00000530413.1:-380
 |nearest_unigene=Hs.170622
 |peak_score=1