TSS: Rfhg 142661.1: Difference between revisions

Revision as of 22:51, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_142661.1
Species:	human
Chr:	chr11

Start:	104918138
End:	104918174
Strand:	-

Source datasets

FANTOM5|ENCODE

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2491865,EH38E1566374)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000528437.5:0 ENST00000531091.5:0 ENST00000527425.5:0 ENST00000527617.1:0 ENST00000530264.1:0 BC032472:0
GeneID:	643733
HGNC/MGI_ID:	HGNC:53657
UniProt_ID:	Q05BX3
Nearer transcript ids and distances:	ENST00000527637.5:-1 NR_034078.1:-1 NR_034079.1:-1 view more...

Gene_name:	CASP17P
Gene_symbol:	CASP4LP
Gene_synonyms:
Gene_source:	HGNC:53657

TATA-Box annotation

Distance to TSS:	19
Nearest PromoterID:	NR_034079
Entrez ID:	643733
Nearest Unigene:	Hs.713751
Nearest Refseq:	NR_034078
Nearest Ensembl:	ENSG00000235505
Gene Name:	CASP17P
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.351351
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000528437.5:0 ENST00000531091.5:0 ENST00000527425.5:0 ENST00000527617.1:0 ENST00000530264.1:0 BC032472:0 ENST00000527637.5:-1 NR_034078.1:-1 NR_034079.1:-1
 |annotation=promoter-TSS (NR_034078)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_034079
 |nearest_refseq=NR_034078
+|nearest_transcripts=ENST00000527637.5:-1 NR_034078.1:-1 NR_034079.1:-1
 |nearest_unigene=Hs.713751
 |peak_score=1