TSS: Hg 10654.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=35 |entrez_id=8574 |gc_percent=0.781095 |gene_alias=AFAR|AFAR1|AFB1-AR1|AKR7 |gene_description=aldo-keto reductase family 7 mem...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AFAR1= | |||
|AFB1-AR1= | |||
|AKR7= | |||
|all_trans=ENST00000235835.7:0 ENST00000330072.9:0 ENST00000492217.1:0 NM_003689:0 uc001bbw.4:0 uc057cwl.1:0 uc057cwp.1:0 BC004111:0 BC011586:0 BC013996:0 AF026947:0 AK225267:0 BC007352:0 BC012171:0 EU794591:0 Y16675:0 BC010852:0 AK303131:0 AK310609:0 KJ901887:31 DQ891003:34 DQ894182:34 BT007347:36 ENST00000489286.5:166 uc057cwm.1:166 | |||
|chr=chr1 | |||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |||
|distance_to_tss=35 | |distance_to_tss=35 | ||
|end=19312149 | |||
|entrez_id=8574 | |entrez_id=8574 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=AFAR|AFAR1|AFB1-AR1|AKR7 | |gene_alias=AFAR|AFAR1|AFB1-AR1|AKR7 | ||
|gene_description=aldo-keto reductase family 7 member A2 | |gene_description=aldo-keto reductase family 7 member A2 | ||
|gene_name=AKR7A2 | |gene_id=8574 | ||
|gene_name="aldo-keto reductase family 7, member A2" | |||
|gene_source=HGNC:389 | |||
|gene_symbol=AKR7A2 | |||
|gene_synonyms=AFAR | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:389 | |||
|nearest_ensembl=ENSG00000053371 | |nearest_ensembl=ENSG00000053371 | ||
|nearest_promoter_id=NM_001320979 | |nearest_promoter_id=NM_001320979 | ||
|nearest_refseq=NM_003689 | |nearest_refseq=NM_003689 | ||
|nearest_unigene=Hs.571886 | |nearest_unigene=Hs.571886 | ||
|num_trans=25 | |||
|species=human | |||
|start=19312072 | |||
|strand=- | |||
|transcript_name=ENST00000235835.7 ENST00000330072.9 ENST00000492217.1 NM_003689 uc001bbw.4 uc057cwl.1 uc057cwp.1 BC004111 BC011586 BC013996 AF026947 AK225267 BC007352 BC012171 EU794591 Y16675 BC010852 AK303131 AK310609 | |||
|tss_classification=yes | |||
|tss_id=hg_10654.1 | |tss_id=hg_10654.1 | ||
|tss_score=1 | |||
|uniprot_id=B4DZX4 H3BLU7 V9HWA2 | |||
}} | }} | ||
Revision as of 22:23, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NM_001320979 |
| Entrez ID: | 8574 |
| Nearest Unigene: | Hs.571886 |
| Nearest Refseq: | NM_003689 |
| Nearest Ensembl: | ENSG00000053371 |
| Gene Name: | "aldo-keto reductase family 7, member A2" |
| Gene Alias: | AFAR |
| Gene Description: | aldo-keto reductase family 7 member A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.