TSS: Rfhg 147459.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000536668.2:0 ENST00000535024.6:0 ENST00000381852.4:0 ENST00000546265.1:0 NR_037918.2:0 NM_001291314.2:0 NM_001291315.2:0 NM_001316893.2:0 NR_133575.2:0 LP895862:0 BC071692:0 AB593030:0 BC064553:0 BC031043:0 AB593029:0 AK123548:0 AB593028:0 ENST00000541977.5:23 ENST00000541175.1:107 ENST00000543969.1:214
|annotation=promoter-TSS (NR_133575)
|annotation=promoter-TSS (NR_133575)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_133575
|nearest_promoter_id=NR_133575
|nearest_refseq=NM_006250
|nearest_refseq=NM_006250
|nearest_transcripts=ENST00000541977.5:23 ENST00000541175.1:107 ENST00000543969.1:214
|nearest_unigene=Hs.656965
|nearest_unigene=Hs.656965
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000381852.4 ENST00000546265.1 BC064553 BC031043 AB593029 AB593028
|transcript_name=ENST00000536668.2 ENST00000535024.6 ENST00000381852.4 ENST00000546265.1 NR_037918.2 NM_001291314.2 NM_001291315.2 NM_001316893.2 NR_133575.2 LP895862 BC071692 AB593030 BC064553 BC031043 AB593029 AK123548 AB593028
|tss_cluster_detected=13
|tss_cluster_detected=13
|tss_id=rfhg_147459.1
|tss_id=rfhg_147459.1

Revision as of 02:43, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_147459.1
TSS ID(Version3):hg_129607.1
hg_129608.1
Species:human
Chr:chr12
Start:11171567
End:11171636
Strand:-
Source datasetsFANTOM5|DRA000914|PRJDB5282|PRJNA4843412|DRA013844
|PRJNA548673|PRJNA401781|PRJNA615891|PRJNA597322
ProtocolCAGE|C1CAGE|NETCAGE|ReCappable-seq|RAMPAGE|SLIC_CAGE
|TIF-seq2|oligo_capping|STRIPE-seq
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2529652,EH38E1592632)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000536668.2:0
ENST00000535024.6:0
ENST00000381852.4:0
ENST00000546265.1:0
NR_037918.2:0
NM_001291314.2:0
NM_001291315.2:0
NM_001316893.2:0
NR_133575.2:0
LP895862:0
BC071692:0
AB593030:0
BC064553:0
BC031043:0
AB593029:0
AK123548:0
AB593028:0
GeneID:50840 5554
HGNC/MGI_ID:HGNC:14920 HGNC:9366
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000541977.5:23
  • ENST00000541175.1:107
  • ENST00000543969.1:214
view more...
Gene_name:PRH1
Gene_symbol:PRH1 TAS2R14
Gene_synonyms:Pa T2R14 TRB1
Gene_source:HGNC:14920 HGNC:9366



TATA-Box annotation

Distance to TSS:10
Nearest PromoterID:NR_133575
Entrez ID:5554
Nearest Unigene:Hs.656965
Nearest Refseq:NM_006250
Nearest Ensembl:ENSG00000231887
Gene Name:PRH1
Gene Alias:Db-s|PA|PIF-S|PRH2|Pr1/Pr2
Gene Type:protein-coding
CpG%:0.115942
GC%:0.685714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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