TSS: Rfhg 147883.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=HQ258331:-94 HQ258475:-94 KJ899353:-94 KJ899354:-94 KJ906281:-94 BC039267:-104 CR936647:-104 ENST00000197268.13:-115 ENST00000416494.6:-115 NM_020853.2:-115 AK125278:-115 LF207435:-181 MA443012:-181 BC132772:-212 BC132774:-212 | |||
|annotation=intron (NM_020853, intron 1 of 12) | |annotation=intron (NM_020853, intron 1 of 12) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_020853 | |nearest_promoter_id=NM_020853 | ||
|nearest_refseq=NM_020853 | |nearest_refseq=NM_020853 | ||
|nearest_transcripts=BC039267:-104 CR936647:-104 ENST00000197268.13:-115 ENST00000416494.6:-115 NM_020853.2:-115 AK125278:-115 LF207435:-181 MA443012:-181 BC132772:-212 BC132774:-212 | |||
|nearest_unigene=Hs.132660 | |nearest_unigene=Hs.132660 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 02:59, 8 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | PRJNA4843412 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2531430,EH38E1594080) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 117 |
|---|---|
| Nearest PromoterID: | NM_020853 |
| Entrez ID: | 57613 |
| Nearest Unigene: | Hs.132660 |
| Nearest Refseq: | NM_020853 |
| Nearest Ensembl: | ENSG00000084444 |
| Gene Name: | FAM234B |
| Gene Alias: | KIAA1467 |
| Gene Type: | protein-coding |
| CpG%: | 0.200000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |