TSS: Rfhg 147903.1: Difference between revisions

Revision as of 03:00, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_147903.1
Species:	human
Chr:	chr12

Start:	13196553
End:	13196561
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2531630,EH38E1594248)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF207438:134 MA443015:134
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	U77085:138 ENST00000431267.2:162 AK310798:162 Y07909:162 ENST00000542474.5:165 ENST00000544053.5:165 ENST00000542289.1:165 ENST00000256951.10:165 NM_001423.3:165 AK308505:165 BC047300:182 ENST00000538364.5:222 ENST00000535134.5:225 ENST00000541935.5:225 ENST00000396301.7:225 BC017854:225 AK299388:225 AK312246:233 Z50751:235 view more...

Gene_name:	EMP1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-169
Nearest PromoterID:	NM_001423
Entrez ID:	2012
Nearest Unigene:	Hs.719042
Nearest Refseq:	NM_001423
Nearest Ensembl:	ENSG00000134531
Gene Name:	EMP1
Gene Alias:	CL-20\|EMP-1\|TMP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "U77085:138 ENST00000431267.2:162 AK310798:162 Y07909:162 ENST00000542474.5:165 ENST00000544053.5:165 ENST00000542289.1:165 ENST00000256951.10:165 NM_001423.3:165 AK308505:165 BC047300:182 ENST00000538364.5:222 ENST00000535134.5:225 ENST00000541935.5:225 ENST00000396301.7:225 BC017854:225 AK299388:225 AK312246:233 Z50751:235" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF207438:134 MA443015:134 U77085:138 ENST00000431267.2:162 AK310798:162 Y07909:162 ENST00000542474.5:165 ENST00000544053.5:165 ENST00000542289.1:165 ENST00000256951.10:165 NM_001423.3:165 AK308505:165 BC047300:182 ENST00000538364.5:222 ENST00000535134.5:225 ENST00000541935.5:225 ENST00000396301.7:225 BC017854:225 AK299388:225 AK312246:233 Z50751:235
 |annotation=promoter-TSS (NM_001423)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001423
 |nearest_refseq=NM_001423
+|nearest_transcripts=U77085:138 ENST00000431267.2:162 AK310798:162 Y07909:162 ENST00000542474.5:165 ENST00000544053.5:165 ENST00000542289.1:165 ENST00000256951.10:165 NM_001423.3:165 AK308505:165 BC047300:182 ENST00000538364.5:222 ENST00000535134.5:225 ENST00000541935.5:225 ENST00000396301.7:225 BC017854:225 AK299388:225 AK312246:233 Z50751:235
 |nearest_unigene=Hs.719042
 |peak_score=1