TSS: Rfhg 149112.1: Difference between revisions

Revision as of 03:55, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_149112.1
Species:	human
Chr:	chr12

Start:	31073773
End:	31073803
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2545149,EH38E1602910)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000669174.1:0
GeneID:	100506660
HGNC/MGI_ID:	HGNC:44176
UniProt_ID:
Nearer transcript ids and distances:	ENST00000500527.1:-44 NR_038927.2:-44 AK096360:-44 ENST00000618041.1:266 view more...

Gene_name:	DDX11-AS1
Gene_symbol:	DDX11-AS1
Gene_synonyms:	CONCR SCAT4
Gene_source:	HGNC:44176

TATA-Box annotation

Distance to TSS:	59
Nearest PromoterID:	NR_038927
Entrez ID:	100506660
Nearest Unigene:	Hs.586774
Nearest Refseq:	NR_038927
Nearest Ensembl:	ENSG00000245614
Gene Name:	DDX11-AS1
Gene Alias:	CONCR\|SCAT4
Gene Type:	ncRNA
CpG%:	0.133333
GC%:	0.677419
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000669174.1:0 ENST00000500527.1:-44 NR_038927.2:-44 AK096360:-44 ENST00000618041.1:266
 |annotation=promoter-TSS (NM_152438)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_038927
 |nearest_refseq=NR_038927
+|nearest_transcripts=ENST00000500527.1:-44 NR_038927.2:-44 AK096360:-44 ENST00000618041.1:266
 |nearest_unigene=Hs.586774
 |peak_score=1