TSS: Rfhg 14989.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000496768.5:0 ENST00000479266.5:0 ENST00000368009.7:0 ENST00000477684.5:0 ENST00000486962.5:0 ENST00000368007.8:0 ENST00000492411.5:0 ENST00000392190.9:0 ENST00000368008.5:0 ENST00000473918.1:0 NM_005600.3:0 NM_001185094.2:0 NM_001185093.2:0 NM_001185092.2:0 LF205460:0 MA441037:0 AF069987:0 AK313323:0 BC046149:0 LF213845:0 MA449422:0 ENST00000478277.5:5 DQ576959:9 AK296606:18 ENST00000496861.5:85 BC039150:116 ENST00000491497.1:246 LF320736:261 MA556313:261
|annotation=promoter-TSS (NM_001185093)
|annotation=promoter-TSS (NM_001185093)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001185092
|nearest_promoter_id=NM_001185092
|nearest_refseq=NM_005600
|nearest_refseq=NM_005600
|nearest_transcripts=ENST00000478277.5:5 DQ576959:9 AK296606:18 ENST00000496861.5:85 BC039150:116 ENST00000491497.1:246 LF320736:261 MA556313:261
|nearest_unigene=Hs.146406
|nearest_unigene=Hs.146406
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000496768.5 ENST00000479266.5 ENST00000368009.7 ENST00000477684.5 ENST00000486962.5 ENST00000368007.8 ENST00000492411.5 ENST00000392190.9 ENST00000368008.5 ENST00000473918.1 AF069987 AK313323 BC046149
|transcript_name=ENST00000496768.5 ENST00000479266.5 ENST00000368009.7 ENST00000477684.5 ENST00000486962.5 ENST00000368007.8 ENST00000492411.5 ENST00000392190.9 ENST00000368008.5 ENST00000473918.1 NM_005600.3 NM_001185094.2 NM_001185093.2 NM_001185092.2 LF205460 MA441037 AF069987 AK313323 BC046149 LF213845 MA449422
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_14989.1
|tss_id=rfhg_14989.1

Revision as of 04:34, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_14989.1
TSS ID(Version3):hg_6200.1
Species:human
Chr:chr1
Start:161118075
End:161118135
Strand:+
Source datasetsFANTOM5|PRJDB5282|PRJNA4843412|DRA013844|PRJNA401781
|PRJNA548673|PRJNA615891
ProtocolCAGE|C1CAGE|NETCAGE|oligo_capping|RAMPAGE|ReCappable-seq
|SLIC_CAGE|TIF-seq2
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2230796,EH38E1391074)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000496768.5:0
ENST00000479266.5:0
ENST00000368009.7:0
ENST00000477684.5:0
ENST00000486962.5:0
ENST00000368007.8:0
ENST00000492411.5:0
ENST00000392190.9:0
ENST00000368008.5:0
ENST00000473918.1:0
NM_005600.3:0
NM_001185094.2:0
NM_001185093.2:0
NM_001185092.2:0
LF205460:0
MA441037:0
AF069987:0
AK313323:0
BC046149:0
LF213845:0
MA449422:0
GeneID:4817
HGNC/MGI_ID:HGNC:7828
UniProt_ID:B2R8D1 Q86X76
Nearer transcript ids and distances:
  • ENST00000478277.5:5
  • DQ576959:9
  • AK296606:18
  • ENST00000496861.5:85
  • BC039150:116
  • ENST00000491497.1:246
  • LF320736:261
  • MA556313:261
view more...
Gene_name:NIT1
Gene_symbol:NIT1
Gene_synonyms:
Gene_source:HGNC:7828



TATA-Box annotation

Distance to TSS:0
Nearest PromoterID:NM_001185092
Entrez ID:4817
Nearest Unigene:Hs.146406
Nearest Refseq:NM_005600
Nearest Ensembl:ENSG00000158793
Gene Name:NIT1
Gene Alias:-
Gene Type:protein-coding
CpG%:0.150000
GC%:0.721311
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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