TSS: Rfhg 152026.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000338146.7:0 NM_207344.4:0 LF208952:0 MA444529:0 AK300594:0 AF451989:0 AL832247:0 BC020844:0 AK291920:0 BX647957:0 KJ895960:4 AK074733:27 AF289571:34
|annotation=promoter-TSS (NM_207344)
|annotation=promoter-TSS (NM_207344)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_207344
|nearest_promoter_id=NM_207344
|nearest_refseq=NM_207344
|nearest_refseq=NM_207344
|nearest_transcripts=KJ895960:4 AK074733:27 AF289571:34
|nearest_unigene=Hs.128676
|nearest_unigene=Hs.128676
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000338146.7 AK300594 AF451989 AL832247 BC020844 AK291920 BX647957
|transcript_name=ENST00000338146.7 NM_207344.4 LF208952 MA444529 AK300594 AF451989 AL832247 BC020844 AK291920 BX647957
|tss_cluster_detected=13
|tss_cluster_detected=13
|tss_id=rfhg_152026.1
|tss_id=rfhg_152026.1

Revision as of 06:13, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_152026.1
TSS ID(Version3):hg_126113.1
hg_126114.1
Species:human
Chr:chr12
Start:56468537
End:56468588
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJNA401781|PRJNA548673
|PRJNA615891|PRJNA4843412|DRA013844|PRJDB5282
ProtocolCAGE|TSS_database|oligo_capping|ReCappable-seq|SLIC_CAGE
|NETCAGE|C1CAGE|TIF-seq2
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2563754,EH38E1615757)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000338146.7:0
NM_207344.4:0
LF208952:0
MA444529:0
AK300594:0
AF451989:0
AL832247:0
BC020844:0
AK291920:0
BX647957:0
GeneID:283377
HGNC/MGI_ID:HGNC:27468
UniProt_ID:B4DUC9 Q8WW59
Nearer transcript ids and distances:
  • KJ895960:4
  • AK074733:27
  • AF289571:34
view more...
Gene_name:SPRYD4
Gene_symbol:SPRYD4
Gene_synonyms:DKFZp686N0877
Gene_source:HGNC:27468



TATA-Box annotation

Distance to TSS:-16
Nearest PromoterID:NM_207344
Entrez ID:283377
Nearest Unigene:Hs.128676
Nearest Refseq:NM_207344
Nearest Ensembl:ENSG00000176422
Gene Name:SPRYD4
Gene Alias:-
Gene Type:protein-coding
CpG%:0.078431
GC%:0.653846
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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