TSS: Rfhg 152787.1: Difference between revisions

Revision as of 06:50, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_152787.1
Species:	human
Chr:	chr12

Start:	63152183
End:	63152202
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2568826,EH38E1619040)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	AVPR1A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	618
Nearest PromoterID:	NM_000706
Entrez ID:	552
Nearest Unigene:	Hs.2131
Nearest Refseq:	NM_000706
Nearest Ensembl:	ENSG00000166148
Gene Name:	AVPR1A
Gene Alias:	AVPR V1a\|AVPR1\|V1aR
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.550000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=5' UTR (NM_000706, exon 1 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000706
 |nearest_refseq=NM_000706
+|nearest_transcripts=
 |nearest_unigene=Hs.2131
 |peak_score=1