TSS: Rfhg 153778.1: Difference between revisions

Revision as of 07:33, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_153778.1
Species:	human
Chr:	chr12

Start:	76029274
End:	76029311
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2578851,EH38E1625678)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PHLDA1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2484
Nearest PromoterID:	NM_007350
Entrez ID:	22822
Nearest Unigene:	Hs.602085
Nearest Refseq:	NM_007350
Nearest Ensembl:	ENSG00000139289
Gene Name:	PHLDA1
Gene Alias:	DT1P1B11\|PHRIP\|TDAG51
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.394737
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_007350, exon 2 of 2)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_007350
 |nearest_refseq=NM_007350
+|nearest_transcripts=
 |nearest_unigene=Hs.602085
 |peak_score=1