TSS: Rfhg 154444.1: Difference between revisions

Revision as of 08:03, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_154444.1
Species:	human
Chr:	chr12

Start:	89525883
End:	89525892
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2588171,EH38E1630958)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	HQ447314:-3 KJ895949:-3 CU693124:-3
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000539190.6:-101 ENST00000548715.5:-105 BX647258:-106 ENST00000547496.5:-108 ENST00000546830.1:-108 AK074772:-108 AK295596:-108 ENST00000547274.5:-128 BC026080:-132 EF011619:-132 ENST00000313546.8:-155 NM_172240.3:-155 NR_037659.2:-155 NM_001199781.2:-155 ENST00000393179.8:268 ENST00000548729.5:-306 ENST00000549035.1:320 AK123106:320 ENST00000547474.1:-370 NM_001199782.1:-370 AK297677:-370 NM_001199777.2:453 NR_037660.2:453 ENST00000552563.1:468 view more...

Gene_name:	POC1B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	160
Nearest PromoterID:	NM_172240
Entrez ID:	282809
Nearest Unigene:	Hs.25130
Nearest Refseq:	NM_172240
Nearest Ensembl:	ENSG00000139323
Gene Name:	POC1B
Gene Alias:	CORD20\|PIX1\|TUWD12\|WDR51B
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.700000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "ENST00000539190.6:-101 ENST00000548715.5:-105 BX647258:-106 ENST00000547496.5:-108 ENST00000546830.1:-108 AK074772:-108 AK295596:-108 ENST00000547274.5:-128 BC026080:-132 EF011619:-132 ENST00000313546.8:-155 NM_172240.3:-155 NR_037659.2:-155 NM_001199781.2:-155 ENST00000393179.8:268 ENST00000548729.5:-306 ENST00000549035.1:320 AK123106:320 ENST00000547474.1:-370 NM_001199782.1:-370 AK297677:-370 NM_001199777.2:453 NR_037660.2:453 ENST00000552563.1:468" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=HQ447314:-3 KJ895949:-3 CU693124:-3 ENST00000539190.6:-101 ENST00000548715.5:-105 BX647258:-106 ENST00000547496.5:-108 ENST00000546830.1:-108 AK074772:-108 AK295596:-108 ENST00000547274.5:-128 BC026080:-132 EF011619:-132 ENST00000313546.8:-155 NM_172240.3:-155 NR_037659.2:-155 NM_001199781.2:-155 ENST00000393179.8:268 ENST00000548729.5:-306 ENST00000549035.1:320 AK123106:320 ENST00000547474.1:-370 NM_001199782.1:-370 AK297677:-370 NM_001199777.2:453 NR_037660.2:453 ENST00000552563.1:468
 |annotation=promoter-TSS (NM_001199777)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_172240
 |nearest_refseq=NM_172240
+|nearest_transcripts=ENST00000539190.6:-101 ENST00000548715.5:-105 BX647258:-106 ENST00000547496.5:-108 ENST00000546830.1:-108 AK074772:-108 AK295596:-108 ENST00000547274.5:-128 BC026080:-132 EF011619:-132 ENST00000313546.8:-155 NM_172240.3:-155 NR_037659.2:-155 NM_001199781.2:-155 ENST00000393179.8:268 ENST00000548729.5:-306 ENST00000549035.1:320 AK123106:320 ENST00000547474.1:-370 NM_001199782.1:-370 AK297677:-370 NM_001199777.2:453 NR_037660.2:453 ENST00000552563.1:468
 |nearest_unigene=Hs.25130
 |peak_score=1