TSS: Rfhg 159478.1: Difference between revisions

Revision as of 12:08, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_159478.1
Species:	human
Chr:	chr13

Start:	32216469
End:	32216482
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	CTCF-only,CTCF-bound (EH38D2638456,EH38E1665740)
Category:	CTCF-only

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZAR1L
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	95479
Nearest PromoterID:	NM_001136571
Entrez ID:	646799
Nearest Unigene:	Hs.569254
Nearest Refseq:	NM_001136571
Nearest Ensembl:	ENSG00000189167
Gene Name:	ZAR1L
Gene Alias:	Z3CXXC7\|ZAR2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_023037, intron 35 of 60)
 |ccre_category=CTCF-only
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001136571
 |nearest_refseq=NM_001136571
+|nearest_transcripts=
 |nearest_unigene=Hs.569254
 |peak_score=1