TSS: Rfhg 159997.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000379310.8:0 ENST00000281496.6:0 NM_015058.2:0 NM_001009814.2:0 BC053674:0 BC131802:6 AB590583:60 AK095155:120 | |||
|annotation=promoter-TSS (NR_039974) | |annotation=promoter-TSS (NR_039974) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_015058 | |nearest_promoter_id=NM_015058 | ||
|nearest_refseq=NM_015058 | |nearest_refseq=NM_015058 | ||
|nearest_transcripts=BC131802:6 AB590583:60 AK095155:120 | |||
|nearest_unigene=Hs.368282 | |nearest_unigene=Hs.368282 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000379310.8 ENST00000281496.6 BC053674 | |transcript_name=ENST00000379310.8 ENST00000281496.6 NM_015058.2 NM_001009814.2 BC053674 | ||
|tss_cluster_detected=4 | |tss_cluster_detected=4 | ||
|tss_id=rfhg_159997.1 | |tss_id=rfhg_159997.1 | ||
Revision as of 12:18, 8 November 2024
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA401781|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 4 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2646432,EH38E1671140) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_015058 |
| Entrez ID: | 23078 |
| Nearest Unigene: | Hs.368282 |
| Nearest Refseq: | NM_015058 |
| Nearest Ensembl: | ENSG00000102763 |
| Gene Name: | VWA8 |
| Gene Alias: | KIAA0564|P7BP2 |
| Gene Type: | protein-coding |
| CpG%: | 0.090909 |
| GC%: | 0.688889 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.