TSS: Rfhg 160000.1: Difference between revisions

Revision as of 12:18, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_160000.1
Species:	human
Chr:	chr13

Start:	42040553
End:	42040634
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2646501,EH38E1671183)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001204504.3:-483
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	DGKH
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	557
Nearest PromoterID:	NM_001204504
Entrez ID:	160851
Nearest Unigene:	Hs.630380
Nearest Refseq:	NM_152910
Nearest Ensembl:	ENSG00000102780
Gene Name:	DGKH
Gene Alias:	DGKeta
Gene Type:	protein-coding
CpG%:	0.148148
GC%:	0.780488
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001204504.3:-483
 |annotation=intron (NM_001204504, intron 1 of 29)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001204504
 |nearest_refseq=NM_152910
+|nearest_transcripts=
 |nearest_unigene=Hs.630380
 |peak_score=1