TSS: Rfhg 16154.1: Difference between revisions

Revision as of 12:47, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_16154.1
Species:	human
Chr:	chr1

Start:	174799534
End:	174799544
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2242162,EH38E1398954)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001366455.1:194 NM_001366456.1:194 NM_001243765.2:194 NM_001366454.1:194 NM_001330989.2:194
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AB007940:353 ENST00000489615.5:388 view more...

Gene_name:	RABGAP1L
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-199
Nearest PromoterID:	NM_001366456
Entrez ID:	9910
Nearest Unigene:	Hs.585378
Nearest Refseq:	NM_014857
Nearest Ensembl:	ENSG00000152061
Gene Name:	RABGAP1L
Gene Alias:	HHL\|TBC1D18
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.363636
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001366455.1:194 NM_001366456.1:194 NM_001243765.2:194 NM_001366454.1:194 NM_001330989.2:194 AB007940:353 ENST00000489615.5:388
 |annotation=promoter-TSS (NM_001243765)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001366456
 |nearest_refseq=NM_014857
+|nearest_transcripts=AB007940:353 ENST00000489615.5:388
 |nearest_unigene=Hs.585378
 |peak_score=1