TSS: Rfhg 163265.1: Difference between revisions

Revision as of 13:18, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_163265.1
Species:	human
Chr:	chr14

Start:	20455965
End:	20455985
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2697590,EH38E1700985)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF334339:-23 MA569916:-23
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LY501237:151 MA780125:151 LF334338:343 MA569915:343 LF334340:-419 MA569917:-419 view more...

Gene_name:	APEX1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	749
Nearest PromoterID:	NM_001641
Entrez ID:	328
Nearest Unigene:	Hs.73722
Nearest Refseq:	NM_001641
Nearest Ensembl:	ENSG00000100823
Gene Name:	APEX1
Gene Alias:	APE\|APE1\|APEN\|APEX\|APX\|HAP1\|REF1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.761905
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF334339:-23 MA569916:-23 LY501237:151 MA780125:151 LF334338:343 MA569915:343 LF334340:-419 MA569917:-419
 |annotation=exon (NM_080648, exon 3 of 5)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001641
 |nearest_refseq=NM_001641
+|nearest_transcripts=LY501237:151 MA780125:151 LF334338:343 MA569915:343 LF334340:-419 MA569917:-419
 |nearest_unigene=Hs.73722
 |peak_score=1