TSS: Rfhg 163332.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000555835.3:0 ENST00000397995.2:0 ENST00000553909.1:0 ENST00000554073.1:0 NM_001282193.2:0 NM_002937.5:0 NM_001282192.2:0 NM_001385273.1:0 NM_001385271.1:0 AK313989:0 BC015520:0 GQ900976:0 BC054880:0 LF334359:0 MA569936:0 BX248010:9 BX247985:-102 AK092422:-312 LF384987:-312 MA620564:-312 ENST00000336811.10:-348 NM_001145.4:-348 FJ236304:-348
|annotation=promoter-TSS (NM_001282192)
|annotation=promoter-TSS (NM_001282192)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001282192
|nearest_promoter_id=NM_001282192
|nearest_refseq=NM_002937
|nearest_refseq=NM_002937
|nearest_transcripts=BX248010:9 BX247985:-102 AK092422:-312 LF384987:-312 MA620564:-312 ENST00000336811.10:-348 NM_001145.4:-348 FJ236304:-348
|nearest_unigene=Hs.283749
|nearest_unigene=Hs.283749
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000555835.3 ENST00000397995.2 ENST00000554073.1 AK313989 BC015520 GQ900976 BC054880
|transcript_name=ENST00000555835.3 ENST00000397995.2 ENST00000553909.1 ENST00000554073.1 NM_001282193.2 NM_002937.5 NM_001282192.2 NM_001385273.1 NM_001385271.1 AK313989 BC015520 GQ900976 BC054880 LF334359 MA569936
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_163332.1
|tss_id=rfhg_163332.1

Revision as of 13:19, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_163332.1
TSS ID(Version3):hg_138456.1
hg_138457.1
Species:human
Chr:chr14
Start:20684525
End:20684650
Strand:+
Source datasetsFANTOM5|EPD|ENCODE|PRJNA4843412|DRA013844|PRJDB5282
|PRJNA615891|PRJNA548673
ProtocolCAGE|TSS_database|NETCAGE|C1CAGE|SLIC_CAGE|TIF-seq2
|ReCappable-seq
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2697821,EH38E1701166)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000555835.3:0
ENST00000397995.2:0
ENST00000553909.1:0
ENST00000554073.1:0
NM_001282193.2:0
NM_002937.5:0
NM_001282192.2:0
NM_001385273.1:0
NM_001385271.1:0
AK313989:0
BC015520:0
GQ900976:0
BC054880:0
LF334359:0
MA569936:0
GeneID:283 6038
HGNC/MGI_ID:HGNC:10047 HGNC:483
UniProt_ID:Q53XB4
Nearer transcript ids and distances:
  • BX248010:9
  • BX247985:-102
  • AK092422:-312
  • LF384987:-312
  • MA620564:-312
  • ENST00000336811.10:-348
  • NM_001145.4:-348
  • FJ236304:-348
view more...
Gene_name:RNASE4
Gene_symbol:ANG RNASE4
Gene_synonyms:RAA1 RAB1 RNASE5
Gene_source:HGNC:10047 HGNC:483



TATA-Box annotation

Distance to TSS:27
Nearest PromoterID:NM_001282192
Entrez ID:6038
Nearest Unigene:Hs.283749
Nearest Refseq:NM_002937
Nearest Ensembl:ENSG00000258818
Gene Name:RNASE4
Gene Alias:RAB1|RNS4
Gene Type:protein-coding
CpG%:0.056000
GC%:0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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