TSS: Rfhg 163890.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000390531.1:0 U26976:0 MG789224:0 S80930:0 X74390:0 U85394:0 MG791436:0 MG789580:0 MG790395:0 X04945:0 X60146:-54 X58765:-149 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NR_146543 | |nearest_promoter_id=NR_146543 | ||
|nearest_refseq=NR_146543 | |nearest_refseq=NR_146543 | ||
|nearest_transcripts=X60146:-54 X58765:-149 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000390531.1 | |transcript_name=ENST00000390531.1 U26976 MG789224 S80930 X74390 U85394 MG791436 MG789580 MG790395 X04945 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_163890.1 | |tss_id=rfhg_163890.1 | ||
Revision as of 13:29, 8 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2699334,EH38E1702336) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17986 |
|---|---|
| Nearest PromoterID: | NR_146543 |
| Entrez ID: | 105370400 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_146543 |
| Nearest Ensembl: | ENSG00000259054 |
| Gene Name: | LINC02332 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.526316 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.