TSS: Rfhg 165159.1: Difference between revisions

Revision as of 13:54, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_165159.1
Species:	human
Chr:	chr14

Start:	35402081
End:	35402091
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2708704,EH38E1708532)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF329309:16 MA564886:16
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	MP330166:171 LF329308:375 MA564885:375 LF329310:-394 MA564887:-394 view more...

Gene_name:	NFKBIA
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2668
Nearest PromoterID:	NM_020529
Entrez ID:	4792
Nearest Unigene:	Hs.81328
Nearest Refseq:	NM_020529
Nearest Ensembl:	ENSG00000100906
Gene Name:	NFKBIA
Gene Alias:	EDAID2\|IKBA\|MAD-3\|NFKBI
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.454545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF329309:16 MA564886:16 MP330166:171 LF329308:375 MA564885:375 LF329310:-394 MA564887:-394
 |annotation=intron (NM_020529, intron 5 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_020529
 |nearest_refseq=NM_020529
+|nearest_transcripts=MP330166:171 LF329308:375 MA564885:375 LF329310:-394 MA564887:-394
 |nearest_unigene=Hs.81328
 |peak_score=1