TSS: Rfhg 165673.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000490232.3:0 NR_027260.1:0 ENST00000655317.1:-5 X02067:-50 ENST00000659240.1:-55 | |||
|annotation=promoter-TSS (NR_027260) | |annotation=promoter-TSS (NR_027260) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NR_027260 | |nearest_promoter_id=NR_027260 | ||
|nearest_refseq=NR_027260 | |nearest_refseq=NR_027260 | ||
|nearest_transcripts=ENST00000655317.1:-5 X02067:-50 ENST00000659240.1:-55 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000490232.3 | |transcript_name=ENST00000490232.3 NR_027260.1 | ||
|tss_cluster_detected=6 | |tss_cluster_detected=6 | ||
|tss_id=rfhg_165673.1 | |tss_id=rfhg_165673.1 | ||
Revision as of 14:04, 8 November 2024
Basic information about the TSS
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| Source datasets | DRA000914|RAMPAGE|PRJNA548673|PRJNA401781|PRJNA597322 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|STRIPE-seq|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 6 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2716228,EH38E1712367) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_027260 |
| Entrez ID: | 378706 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_027260 |
| Nearest Ensembl: | ENSG00000274012 |
| Gene Name: | RN7SL2 |
| Gene Alias: | 7L1C|7L30.1|7SL1c|RNSRP2 |
| Gene Type: | scRNA |
| CpG%: | 0.227273 |
| GC%: | 0.826087 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.