TSS: Rfhg 167734.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000554008.5:0 ENST00000555198.1:0
|annotation=intron (NR_135825, intron 2 of 3)
|annotation=intron (NR_135825, intron 2 of 3)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NR_003951
|nearest_promoter_id=NR_003951
|nearest_refseq=NR_003951
|nearest_refseq=NR_003951
|nearest_transcripts=
|nearest_unigene=Hs.712468
|nearest_unigene=Hs.712468
|peak_score=1
|peak_score=1

Revision as of 14:43, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_167734.1
Species:human
Chr:chr14
Start:70223758
End:70223806
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2734034,EH38E1725192)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000554008.5:0
ENST00000555198.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:ADAM21P1
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:24019
    Nearest PromoterID:NR_003951
    Entrez ID:145241
    Nearest Unigene:Hs.712468
    Nearest Refseq:NR_003951
    Nearest Ensembl:ENSG00000235812
    Gene Name:ADAM21P1
    Gene Alias:ADAM21P
    Gene Type:pseudo
    CpG%:0.062500
    GC%:0.693878
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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