TSS: Rfhg 168938.1: Difference between revisions

Revision as of 15:04, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_168938.1
Species:	human
Chr:	chr14

Start:	87992453
End:	87992456
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2747964,EH38E1733836)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GALC
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	728
Nearest PromoterID:	NM_000153
Entrez ID:	2581
Nearest Unigene:	Hs.513439
Nearest Refseq:	NM_000153
Nearest Ensembl:	ENSG00000054983
Gene Name:	GALC
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001201402, intron 1 of 16)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000153
 |nearest_refseq=NM_000153
+|nearest_transcripts=
 |nearest_unigene=Hs.513439
 |peak_score=1