TSS: Rfhg 169464.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000415050.3:75 NM_001098621.4:75 ENST00000557574.1:-239 BC030119:-243 AL080118:-246 ENST00000557048.1:-258 NM_015676.3:-258 ENST00000554824.5:-259 ENST00000283534.4:-281 | |||
|annotation=promoter-TSS (NM_022151) | |annotation=promoter-TSS (NM_022151) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_015676 | |nearest_promoter_id=NM_015676 | ||
|nearest_refseq=NM_015676 | |nearest_refseq=NM_015676 | ||
|nearest_transcripts=ENST00000557574.1:-239 BC030119:-243 AL080118:-246 ENST00000557048.1:-258 NM_015676.3:-258 ENST00000554824.5:-259 ENST00000283534.4:-281 | |||
|nearest_unigene=Hs.275352 | |nearest_unigene=Hs.275352 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000415050.3 | |transcript_name=ENST00000415050.3 NM_001098621.4 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_169464.1 | |tss_id=rfhg_169464.1 | ||
Revision as of 15:14, 8 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2752888,EH38E1737601) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 263 |
|---|---|
| Nearest PromoterID: | NM_015676 |
| Entrez ID: | 26175 |
| Nearest Unigene: | Hs.275352 |
| Nearest Refseq: | NM_015676 |
| Nearest Ensembl: | ENSG00000153485 |
| Gene Name: | TMEM251 |
| Gene Alias: | C14orf109 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.