TSS: Rfhg 169858.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000539359.1:0 ENST00000554311.2:0 ENST00000553811.1:0 NM_000623.4:0 NM_001379692.1:0 AK311049:0 AK299316:0 KJ950627:0 KJ950628:0 M88714:0 U35875:-20 ENST00000542454.2:-136 CR749338:-136
|annotation=promoter-TSS (NM_000623)
|annotation=promoter-TSS (NM_000623)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_000623
|nearest_promoter_id=NM_000623
|nearest_refseq=NM_000623
|nearest_refseq=NM_000623
|nearest_transcripts=U35875:-20 ENST00000542454.2:-136 CR749338:-136
|nearest_unigene=Hs.654542
|nearest_unigene=Hs.654542
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000539359.1 ENST00000554311.2 AK311049 AK299316 KJ950627 KJ950628 M88714
|transcript_name=ENST00000539359.1 ENST00000554311.2 ENST00000553811.1 NM_000623.4 NM_001379692.1 AK311049 AK299316 KJ950627 KJ950628 M88714
|tss_cluster_detected=4
|tss_cluster_detected=4
|tss_id=rfhg_169858.1
|tss_id=rfhg_169858.1

Revision as of 15:22, 8 November 2024

Basic information about the TSS

TSS ID:rfhg_169858.1
TSS ID(Version3):hg_141333.1
hg_141332.1
Species:human
Chr:chr14
Start:96204815
End:96204917
Strand:+
Source datasetsFANTOM5|PRJNA4843412|DRA013844|PRJDB5282
ProtocolCAGE|NETCAGE|C1CAGE
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2755774,EH38E1739677)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000539359.1:0
ENST00000554311.2:0
ENST00000553811.1:0
NM_000623.4:0
NM_001379692.1:0
AK311049:0
AK299316:0
KJ950627:0
KJ950628:0
M88714:0
GeneID:623 624
HGNC/MGI_ID:HGNC:1029 HGNC:1030
UniProt_ID:B4DRL4 P30411
Nearer transcript ids and distances:
  • U35875:-20
  • ENST00000542454.2:-136
  • CR749338:-136
view more...
Gene_name:BDKRB2
Gene_symbol:BDKRB1 BDKRB2
Gene_synonyms:B1BKR BK-2 BKR1 bradyb1
Gene_source:HGNC:1029 HGNC:1030



TATA-Box annotation

Distance to TSS:68
Nearest PromoterID:NM_000623
Entrez ID:624
Nearest Unigene:Hs.654542
Nearest Refseq:NM_000623
Nearest Ensembl:ENSG00000168398
Gene Name:BDKRB2
Gene Alias:B2R|BK-2|BK2|BKR2|BRB2
Gene Type:protein-coding
CpG%:0.058824
GC%:0.679612
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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