TSS: Rfhg 169890.1: Difference between revisions

Revision as of 15:22, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_169890.1
Species:	human
Chr:	chr14

Start:	96502769
End:	96502787
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2756046,EH38E1739886)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_122121.1:443
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000569214.1:448 BC019017:448 BC036922:476 view more...

Gene_name:	PAPOLA
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-87
Nearest PromoterID:	NM_001293628
Entrez ID:	10914
Nearest Unigene:	Hs.253726
Nearest Refseq:	NM_032632
Nearest Ensembl:	ENSG00000090060
Gene Name:	PAPOLA
Gene Alias:	PAP\|PAP-alpha
Gene Type:	protein-coding
CpG%:	0.055556
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_122121.1:443 ENST00000569214.1:448 BC019017:448 BC036922:476
 |annotation=promoter-TSS (NR_122121)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001293628
 |nearest_refseq=NM_032632
+|nearest_transcripts=ENST00000569214.1:448 BC019017:448 BC036922:476
 |nearest_unigene=Hs.253726
 |peak_score=1