TSS: Rfhg 170992.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000446501.6:136 NM_001242789.2:136 AK096471:136 ENST00000552127.5:148 LF330691:-164 MA566268:-164 | |||
|annotation=promoter-TSS (NM_001242789) | |annotation=promoter-TSS (NM_001242789) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|nearest_promoter_id=NM_001242789 | |nearest_promoter_id=NM_001242789 | ||
|nearest_refseq=NM_001519 | |nearest_refseq=NM_001519 | ||
|nearest_transcripts=ENST00000552127.5:148 LF330691:-164 MA566268:-164 | |||
|nearest_unigene=Hs.424484 | |nearest_unigene=Hs.424484 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000446501.6 AK096471 | |transcript_name=ENST00000446501.6 NM_001242789.2 AK096471 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_170992.1 | |tss_id=rfhg_170992.1 | ||
Revision as of 15:43, 8 November 2024
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2765593,EH38E1746601) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -136 |
|---|---|
| Nearest PromoterID: | NM_001242789 |
| Entrez ID: | 2972 |
| Nearest Unigene: | Hs.424484 |
| Nearest Refseq: | NM_001519 |
| Nearest Ensembl: | ENSG00000185024 |
| Gene Name: | BRF1 |
| Gene Alias: | BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.