TSS: Rfhg 172793.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000434396.2:0 NM_001190479.3:0 | |||
|annotation=promoter-TSS (NM_001190479) | |annotation=promoter-TSS (NM_001190479) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001190479 | |nearest_promoter_id=NM_001190479 | ||
|nearest_refseq=NM_001190479 | |nearest_refseq=NM_001190479 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.711376 | |nearest_unigene=Hs.711376 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000434396.2 | |transcript_name=ENST00000434396.2 NM_001190479.3 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_172793.1 | |tss_id=rfhg_172793.1 | ||
Revision as of 16:13, 8 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2779567,EH38E1755754) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -463 |
|---|---|
| Nearest PromoterID: | NM_001190479 |
| Entrez ID: | 100131244 |
| Nearest Unigene: | Hs.711376 |
| Nearest Refseq: | NM_001190479 |
| Nearest Ensembl: | ENSG00000230778 |
| Gene Name: | ANKRD63 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.097561 |
| GC%: | 0.785714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.