TSS: Rfhg 172954.1: Difference between revisions

Revision as of 16:16, 8 November 2024

Basic information about the TSS

TSS ID:	rfhg_172954.1
Species:	human
Chr:	chr15

Start:	41332840
End:	41332840
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2780579,EH38E1756553)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000559046.5:15 AK307728:15
GeneID:	51203
HGNC/MGI_ID:	HGNC:18538
UniProt_ID:	H0YKA7
Nearer transcript ids and distances:	ENST00000450592.6:31 ENST00000414849.6:31 BC011008:31 AK293168:31 AK290879:31 AK222819:31 AF217513:40 ENST00000559596.6:41 NM_001243144.2:41 NM_001243143.2:41 NM_001243142.2:41 NM_001301136.2:41 NM_018454.8:41 NM_016359.5:41 ENST00000558582.5:43 AK225703:43 AL833611:43 AK023483:44 ENST00000560747.5:46 BC024772:46 AF090915:50 AF290612:50 BC001308:51 ENST00000559659.1:59 ENST00000560177.5:73 BC012887:73 CU680432:115 KJ906161:115 KJ902570:115 AF305711:118 KJ904749:119 ENST00000558123.5:-146 ENST00000260359.10:-146 view more...

Gene_name:	NUSAP1
Gene_symbol:	NUSAP1
Gene_synonyms:	ANKT BM037 FLJ13421 LNP PRO0310p1 Q0310 SAPL
Gene_source:	HGNC:18538

TATA-Box annotation

Distance to TSS:	-41
Nearest PromoterID:	NM_001243143
Entrez ID:	51203
Nearest Unigene:	Hs.615092
Nearest Refseq:	NM_016359
Nearest Ensembl:	ENSG00000137804
Gene Name:	NUSAP1
Gene Alias:	ANKT\|BM037\|LNP\|NUSAP\|PRO0310p1\|Q0310\|SAPL
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000450592.6:31 ENST00000414849.6:31 BC011008:31 AK293168:31 AK290879:31 AK222819:31 AF217513:40 ENST00000559596.6:41 NM_001243144.2:41 NM_001243143.2:41 NM_001243142.2:41 NM_001301136.2:41 NM_018454.8:41 NM_016359.5:41 ENST00000558582.5:43 AK225703:43 AL833611:43 AK023483:44 ENST00000560747.5:46 BC024772:46 AF090915:50 AF290612:50 BC001308:51 ENST00000559659.1:59 ENST00000560177.5:73 BC012887:73 CU680432:115 KJ906161:115 KJ902570:115 AF305711:118 KJ904749:119 ENST00000558123.5:-146 ENST00000260359.10:-146" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000559046.5:15 AK307728:15 ENST00000450592.6:31 ENST00000414849.6:31 BC011008:31 AK293168:31 AK290879:31 AK222819:31 AF217513:40 ENST00000559596.6:41 NM_001243144.2:41 NM_001243143.2:41 NM_001243142.2:41 NM_001301136.2:41 NM_018454.8:41 NM_016359.5:41 ENST00000558582.5:43 AK225703:43 AL833611:43 AK023483:44 ENST00000560747.5:46 BC024772:46 AF090915:50 AF290612:50 BC001308:51 ENST00000559659.1:59 ENST00000560177.5:73 BC012887:73 CU680432:115 KJ906161:115 KJ902570:115 AF305711:118 KJ904749:119 ENST00000558123.5:-146 ENST00000260359.10:-146
 |annotation=promoter-TSS (NM_007280)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001243143
 |nearest_refseq=NM_016359
+|nearest_transcripts=ENST00000450592.6:31 ENST00000414849.6:31 BC011008:31 AK293168:31 AK290879:31 AK222819:31 AF217513:40 ENST00000559596.6:41 NM_001243144.2:41 NM_001243143.2:41 NM_001243142.2:41 NM_001301136.2:41 NM_018454.8:41 NM_016359.5:41 ENST00000558582.5:43 AK225703:43 AL833611:43 AK023483:44 ENST00000560747.5:46 BC024772:46 AF090915:50 AF290612:50 BC001308:51 ENST00000559659.1:59 ENST00000560177.5:73 BC012887:73 CU680432:115 KJ906161:115 KJ902570:115 AF305711:118 KJ904749:119 ENST00000558123.5:-146 ENST00000260359.10:-146
 |nearest_unigene=Hs.615092
 |peak_score=1