TSS: Rfhg 175648.1: Difference between revisions

Revision as of 11:46, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_175648.1
Species:	human
Chr:	chr15

Start:	67146933
End:	67146974
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2802384,EH38E1772188)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000558463.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SMAD3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	8932
Nearest PromoterID:	NM_001145103
Entrez ID:	4088
Nearest Unigene:	Hs.727986
Nearest Refseq:	NM_005902
Nearest Ensembl:	ENSG00000166949
Gene Name:	SMAD3
Gene Alias:	HSPC193\|HsT17436\|JV15-2\|LDS1C\|LDS3\|MADH3
Gene Type:	protein-coding
CpG%:	0.024390
GC%:	0.595238
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000558463.1:0
 |annotation=intron (NM_001145103, intron 1 of 8)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001145103
 |nearest_refseq=NM_005902
+|nearest_transcripts=
 |nearest_unigene=Hs.727986
 |peak_score=1