TSS: Rfhg 177318.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000359445.7:0 ENST00000268206.12:0 ENST00000561389.1:0 ENST00000557844.1:0 NM_024580.6:0 NM_001322844.2:0 NM_001040610.3:0 NR_136410.2:0 BX538332:0 AK300348:0 AK056656:0 BC014628:10 ENST00000650113.1:22 NM_001322845.2:132 ENST00000558974.1:196
|annotation=promoter-TSS (NM_001348700)
|annotation=promoter-TSS (NM_001348700)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_024580
|nearest_promoter_id=NM_024580
|nearest_refseq=NM_024580
|nearest_refseq=NM_024580
|nearest_transcripts=BC014628:10 ENST00000650113.1:22 NM_001322845.2:132 ENST00000558974.1:196
|nearest_unigene=Hs.459114
|nearest_unigene=Hs.459114
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000359445.7 ENST00000268206.12 ENST00000561389.1 ENST00000557844.1 BX538332 AK300348 AK056656
|transcript_name=ENST00000359445.7 ENST00000268206.12 ENST00000561389.1 ENST00000557844.1 NM_024580.6 NM_001322844.2 NM_001040610.3 NR_136410.2 BX538332 AK300348 AK056656
|tss_cluster_detected=13
|tss_cluster_detected=13
|tss_id=rfhg_177318.1
|tss_id=rfhg_177318.1

Revision as of 12:19, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_177318.1
TSS ID(Version3):hg_151249.1
Species:human
Chr:chr15
Start:82262660
End:82262749
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJNA4843412|DRA013844
|PRJDB5282|PRJNA615891|PRJNA548673|PRJNA401781
ProtocolCAGE|TSS_database|NETCAGE|C1CAGE|TIF-seq2|SLIC_CAGE|RAMPAGE
|ReCappable-seq
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2817295,EH38E1782900)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000359445.7:0
ENST00000268206.12:0
ENST00000561389.1:0
ENST00000557844.1:0
NM_024580.6:0
NM_001322844.2:0
NM_001040610.3:0
NR_136410.2:0
BX538332:0
AK300348:0
AK056656:0
GeneID:79631
HGNC/MGI_ID:HGNC:25789
UniProt_ID:B3KPR5 H0YK75 H0YNW8 Q7Z2Z2
Nearer transcript ids and distances:
  • BC014628:10
  • ENST00000650113.1:22
  • NM_001322845.2:132
  • ENST00000558974.1:196
view more...
Gene_name:EFL1
Gene_symbol:EFL1
Gene_synonyms:FAM42A FLJ13119 HsT19294 RIA1
Gene_source:HGNC:25789



TATA-Box annotation

Distance to TSS:30
Nearest PromoterID:NM_024580
Entrez ID:79631
Nearest Unigene:Hs.459114
Nearest Refseq:NM_024580
Nearest Ensembl:ENSG00000140598
Gene Name:EFL1
Gene Alias:EFTUD1|FAM42A|HsT19294|RIA1|SDS2
Gene Type:protein-coding
CpG%:0.146067
GC%:0.722222
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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