TSS: Rfhg 178352.1: Difference between revisions

Revision as of 12:38, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_178352.1
Species:	human
Chr:	chr15

Start:	91854735
End:	91854748
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2825225,EH38E1788439)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF213088:-201 MA448665:-201
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SLCO3A1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	437
Nearest PromoterID:	NR_135775
Entrez ID:	28232
Nearest Unigene:	Hs.311187
Nearest Refseq:	NM_013272
Nearest Ensembl:	ENSG00000176463
Gene Name:	SLCO3A1
Gene Alias:	OATP-D\|OATP-RP3\|OATP3A1\|OATPD\|OATPRP3\|SLC21A11
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF213088:-201 MA448665:-201
 |annotation=intron (NR_135775, intron 1 of 10)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_135775
 |nearest_refseq=NM_013272
+|nearest_transcripts=
 |nearest_unigene=Hs.311187
 |peak_score=1