TSS: Rfhg 179001.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000560068.1:-22 BC073817:-22 ENST00000560351.2:-67 NR_135827.1:-67 NR_135831.1:-67 NR_135828.1:-67 AK126286:-67 ENST00000656756.1:-175 ENST00000560461.1:365 | |||
|annotation=promoter-TSS (NM_024652) | |annotation=promoter-TSS (NM_024652) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_135827 | |nearest_promoter_id=NR_135827 | ||
|nearest_refseq=NR_135827 | |nearest_refseq=NR_135827 | ||
|nearest_transcripts=ENST00000560351.2:-67 NR_135827.1:-67 NR_135831.1:-67 NR_135828.1:-67 AK126286:-67 ENST00000656756.1:-175 ENST00000560461.1:365 | |||
|nearest_unigene=Hs.659224 | |nearest_unigene=Hs.659224 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=BC073817 | |transcript_name=ENST00000560068.1 BC073817 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_179001.1 | |tss_id=rfhg_179001.1 | ||
Revision as of 12:49, 11 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2833078,EH38E1793517) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NR_135827 |
| Entrez ID: | 101927751 |
| Nearest Unigene: | Hs.659224 |
| Nearest Refseq: | NR_135827 |
| Nearest Ensembl: | ENSG00000259583 |
| Gene Name: | LOC101927751 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.545455 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.