TSS: Rfhg 179315.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000609261.6:0 ENST00000565302.5:0 ENST00000568689.5:0 ENST00000569441.5:0 ENST00000562111.1:0 ENST00000569396.5:0 NM_001005920.4:0 NM_001323918.3:0 NM_001323919.3:0 NM_001323920.3:0 NM_001323922.3:0 NR_136651.3:0 NR_136650.3:0 NR_136652.3:0 AF370420:0 BC073785:0 DQ074695:0 ENST00000562824.5:-1 ENST00000566199.1:5 ENST00000567901.1:16 BC137101:-43 BC137100:-43 LF210746:-111 MA446323:-111 ENST00000563088.5:164 ENST00000567120.5:-166 ENST00000570037.5:218
|annotation=promoter-TSS (NM_001323918)
|annotation=promoter-TSS (NM_001323918)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001323920
|nearest_promoter_id=NM_001323920
|nearest_refseq=NM_001005920
|nearest_refseq=NM_001005920
|nearest_transcripts=ENST00000562824.5:-1 ENST00000566199.1:5 ENST00000567901.1:16 BC137101:-43 BC137100:-43 LF210746:-111 MA446323:-111 ENST00000563088.5:164 ENST00000567120.5:-166 ENST00000570037.5:218
|nearest_unigene=Hs.533771
|nearest_unigene=Hs.533771
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000609261.6 ENST00000565302.5 ENST00000568689.5 ENST00000569441.5 ENST00000562111.1 ENST00000569396.5 AF370420 BC073785 DQ074695
|transcript_name=ENST00000609261.6 ENST00000565302.5 ENST00000568689.5 ENST00000569441.5 ENST00000562111.1 ENST00000569396.5 NM_001005920.4 NM_001323918.3 NM_001323919.3 NM_001323920.3 NM_001323922.3 NR_136651.3 NR_136650.3 NR_136652.3 AF370420 BC073785 DQ074695
|tss_cluster_detected=7
|tss_cluster_detected=7
|tss_id=rfhg_179315.1
|tss_id=rfhg_179315.1

Revision as of 12:55, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_179315.1
Species:human
Chr:chr16
Start:684319
End:684362
Strand:-
Source datasetsPRJNA615891|PRJNA548673|PRJNA401781|PRJNA4843412|DRA013844
ProtocolTIF-seq2|SLIC_CAGE|ReCappable-seq|CAGE|NETCAGE
TSS cluster detected*7

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2835040,EH38E1794980)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000609261.6:0
ENST00000565302.5:0
ENST00000568689.5:0
ENST00000569441.5:0
ENST00000562111.1:0
ENST00000569396.5:0
NM_001005920.4:0
NM_001323918.3:0
NM_001323919.3:0
NM_001323920.3:0
NM_001323922.3:0
NR_136651.3:0
NR_136650.3:0
NR_136652.3:0
AF370420:0
BC073785:0
DQ074695:0
GeneID:339123
HGNC/MGI_ID:HGNC:14148
UniProt_ID:H3BVG3 Q96S16
Nearer transcript ids and distances:
  • ENST00000562824.5:-1
  • ENST00000566199.1:5
  • ENST00000567901.1:16
  • BC137101:-43
  • BC137100:-43
  • LF210746:-111
  • MA446323:-111
  • ENST00000563088.5:164
  • ENST00000567120.5:-166
  • ENST00000570037.5:218
view more...
Gene_name:JMJD8
Gene_symbol:JMJD8
Gene_synonyms:
Gene_source:HGNC:14148



TATA-Box annotation

Distance to TSS:-6
Nearest PromoterID:NM_001323920
Entrez ID:339123
Nearest Unigene:Hs.533771
Nearest Refseq:NM_001005920
Nearest Ensembl:ENSG00000161999
Gene Name:JMJD8
Gene Alias:C16orf20|PP14397
Gene Type:protein-coding
CpG%:0.116279
GC%:0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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