TSS: Rfhg 179941.1: Difference between revisions

Revision as of 13:06, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_179941.1
Species:	human
Chr:	chr16

Start:	2759563
End:	2759597
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000572278.1:150
GeneID:	23524
HGNC/MGI_ID:	HGNC:16639
UniProt_ID:
Nearer transcript ids and distances:	LF340605:179 MA576182:179 LF340603:-214 MA576180:-214 LF340606:250 MA576183:250 ENST00000576076.1:336 BX537511:336 ENST00000572952.1:436 view more...

Gene_name:	SRRM2
Gene_symbol:	SRRM2
Gene_synonyms:	Cwc21 KIAA0324 SRL300 SRm300
Gene_source:	HGNC:16639

TATA-Box annotation

Distance to TSS:	6942
Nearest PromoterID:	NM_016333
Entrez ID:	23524
Nearest Unigene:	Hs.433343
Nearest Refseq:	NM_016333
Nearest Ensembl:	ENSG00000167978
Gene Name:	SRRM2
Gene Alias:	300-KD\|CWF21\|Cwc21\|HSPC075\|SRL300\|SRm300
Gene Type:	protein-coding
CpG%:	0.029412
GC%:	0.542857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000572278.1:150 LF340605:179 MA576182:179 LF340603:-214 MA576180:-214 LF340606:250 MA576183:250 ENST00000576076.1:336 BX537511:336 ENST00000572952.1:436
 |annotation=exon (NM_016333, exon 9 of 15)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_016333
 |nearest_refseq=NM_016333
+|nearest_transcripts=LF340605:179 MA576182:179 LF340603:-214 MA576180:-214 LF340606:250 MA576183:250 ENST00000576076.1:336 BX537511:336 ENST00000572952.1:436
 |nearest_unigene=Hs.433343
 |peak_score=1