TSS: Rfhg 179972.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000576878.1:0 ENST00000570705.1:-178 ENST00000571041.1:-201 LF340668:-223 MA576245:-223 LF340669:258 MA576246:258 LF340667:-339 MA576244:-339 AL833672:-349 LF340671:425 MA576248:425 LF340673:482 MA576250:482
|annotation=intron (NM_016333, intron 11 of 14)
|annotation=intron (NM_016333, intron 11 of 14)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NM_007108
|nearest_promoter_id=NM_007108
|nearest_refseq=NM_007108
|nearest_refseq=NM_007108
|nearest_transcripts=ENST00000570705.1:-178 ENST00000571041.1:-201 LF340668:-223 MA576245:-223 LF340669:258 MA576246:258 LF340667:-339 MA576244:-339 AL833672:-349 LF340671:425 MA576248:425 LF340673:482 MA576250:482
|nearest_unigene=Hs.172772
|nearest_unigene=Hs.172772
|peak_score=1
|peak_score=1

Revision as of 13:07, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_179972.1
Species:human
Chr:chr16
Start:2768729
End:2768747
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000576878.1:0
GeneID:23524
HGNC/MGI_ID:HGNC:16639
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000570705.1:-178
  • ENST00000571041.1:-201
  • LF340668:-223
  • MA576245:-223
  • LF340669:258
  • MA576246:258
  • LF340667:-339
  • MA576244:-339
  • AL833672:-349
  • LF340671:425
  • MA576248:425
  • LF340673:482
  • MA576250:482
view more...
Gene_name:ELOB
Gene_symbol:SRRM2
Gene_synonyms:Cwc21 KIAA0324 SRL300 SRm300
Gene_source:HGNC:16639



TATA-Box annotation

Distance to TSS:8542
Nearest PromoterID:NM_007108
Entrez ID:6923
Nearest Unigene:Hs.172772
Nearest Refseq:NM_007108
Nearest Ensembl:ENSG00000103363
Gene Name:ELOB
Gene Alias:SIII|TCEB2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.578947
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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