TSS: Rfhg 179975.1: Difference between revisions

Revision as of 13:07, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_179975.1
Species:	human
Chr:	chr16

Start:	2769861
End:	2769889
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2837517,EH38E1796912)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000574866.1:6
GeneID:	23524
HGNC/MGI_ID:	HGNC:16639
UniProt_ID:
Nearer transcript ids and distances:	ENST00000573692.1:466 LF340676:484 MA576253:484 ENST00000574331.5:-487 view more...

Gene_name:	ELOB
Gene_symbol:	SRRM2
Gene_synonyms:	Cwc21 KIAA0324 SRL300 SRm300
Gene_source:	HGNC:16639

TATA-Box annotation

Distance to TSS:	7405
Nearest PromoterID:	NM_007108
Entrez ID:	6923
Nearest Unigene:	Hs.172772
Nearest Refseq:	NM_007108
Nearest Ensembl:	ENSG00000103363
Gene Name:	ELOB
Gene Alias:	SIII\|TCEB2
Gene Type:	protein-coding
CpG%:	0.035714
GC%:	0.620690
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000574866.1:6 ENST00000573692.1:466 LF340676:484 MA576253:484 ENST00000574331.5:-487
 |annotation=intron (NM_016333, intron 12 of 14)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_007108
 |nearest_refseq=NM_007108
+|nearest_transcripts=ENST00000573692.1:466 LF340676:484 MA576253:484 ENST00000574331.5:-487
 |nearest_unigene=Hs.172772
 |peak_score=1