TSS: Rfhg 180617.1: Difference between revisions

Revision as of 13:19, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_180617.1
Species:	human
Chr:	chr16

Start:	7304527
End:	7304550
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2841471,EH38E1799559)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000661083.1:-88
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RBFOX1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-28307
Nearest PromoterID:	NM_145892
Entrez ID:	54715
Nearest Unigene:	Hs.459842
Nearest Refseq:	NM_018723
Nearest Ensembl:	ENSG00000078328
Gene Name:	RBFOX1
Gene Alias:	2BP1\|A2BP1\|FOX-1\|FOX1\|HRNBP1
Gene Type:	protein-coding
CpG%:	0.130435
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000661083.1:-88
 |annotation=intron (NM_018723, intron 4 of 15)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_145892
 |nearest_refseq=NM_018723
+|nearest_transcripts=
 |nearest_unigene=Hs.459842
 |peak_score=1