TSS: Rfhg 182610.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000563477.1:0 ENST00000641956.1:-264
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_003369
|nearest_promoter_id=NR_003369
|nearest_refseq=NR_003369
|nearest_refseq=NR_003369
|nearest_transcripts=ENST00000641956.1:-264
|nearest_unigene=Hs.720348
|nearest_unigene=Hs.720348
|peak_score=1
|peak_score=1

Revision as of 13:55, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_182610.1
Species:human
Chr:chr16
Start:29139643
End:29139666
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D2857416,EH38E1810535)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000563477.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000641956.1:-264
Gene_name:RRN3P2
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:64812
Nearest PromoterID:NR_003369
Entrez ID:653390
Nearest Unigene:Hs.720348
Nearest Refseq:NR_003369
Nearest Ensembl:ENSG00000103472
Gene Name:RRN3P2
Gene Alias:-
Gene Type:pseudo
CpG%:0.043478
GC%:0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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