TSS: Rfhg 184355.1: Difference between revisions

Revision as of 14:26, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_184355.1
Species:	human
Chr:	chr16

Start:	55444223
End:	55444226
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2867763,EH38E1817377)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LP896035:40
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MMP2-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	18073
Nearest PromoterID:	NR_147198
Entrez ID:	107984884
Nearest Unigene:	Hs.666473
Nearest Refseq:	NR_147198
Nearest Ensembl:
Gene Name:	MMP2-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LP896035:40
 |annotation=intron (NR_147198, intron 3 of 6)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_147198
 |nearest_refseq=NR_147198
+|nearest_transcripts=
 |nearest_unigene=Hs.666473
 |peak_score=1