TSS: Rfhg 187311.1: Difference between revisions

Revision as of 15:21, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_187311.1
Species:	human
Chr:	chr16

Start:	87417334
End:	87417384
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2895401,EH38E1836123)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MAP1LC3B
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	25023
Nearest PromoterID:	NM_022818
Entrez ID:	81631
Nearest Unigene:	Hs.356061
Nearest Refseq:	NM_022818
Nearest Ensembl:	ENSG00000140941
Gene Name:	MAP1LC3B
Gene Alias:	ATG8F\|LC3B\|MAP1A/1BLC3\|MAP1LC3B-a
Gene Type:	protein-coding
CpG%:	0.080000
GC%:	0.607843
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_015144, intron 8 of 12)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_022818
 |nearest_refseq=NM_022818
+|nearest_transcripts=
 |nearest_unigene=Hs.356061
 |peak_score=1