TSS: Rfhg 187617.1: Difference between revisions

Revision as of 15:26, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_187617.1
TSS ID(Version3):	hg_158619.1 hg_158620.1
Species:	human
Chr:	chr16

Start:	89217623
End:	89217660
Strand:	-

Source datasets

FANTOM5|PRJNA615891|PRJNA401781|PRJNA548673

Protocol

CAGE|TIF-seq2|ReCappable-seq|SLIC_CAGE

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2897624,EH38E1837918)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000570267.2:0 AK098143:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC009880:208

Gene_name:	ZNF778
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-62
Nearest PromoterID:	NM_182531
Entrez ID:	197320
Nearest Unigene:	Hs.647385
Nearest Refseq:	NM_182531
Nearest Ensembl:	ENSG00000170100
Gene Name:	ZNF778
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.108108
GC%:	0.684211
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000570267.2:0 AK098143:0 BC009880:208
 |annotation=promoter-TSS (NM_001201407)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_182531
 |nearest_refseq=NM_182531
+|nearest_transcripts=BC009880:208
 |nearest_unigene=Hs.647385
 |peak_score=1