TSS: Rfhg 189024.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000649520.1:0 ENST00000649186.1:0 NM_001321076.3:0 NM_001321077.3:0 AK299801:0 AK297346:0 ENST00000493294.2:184 ENST00000451807.7:282 ENST00000648263.1:483 | |||
|annotation=promoter-TSS (NM_001321077) | |annotation=promoter-TSS (NM_001321077) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001321077 | |nearest_promoter_id=NM_001321077 | ||
|nearest_refseq=NM_001365 | |nearest_refseq=NM_001365 | ||
|nearest_transcripts=ENST00000493294.2:184 ENST00000451807.7:282 ENST00000648263.1:483 | |||
|nearest_unigene=Hs.463928 | |nearest_unigene=Hs.463928 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000649520.1 ENST00000649186.1 AK299801 AK297346 | |transcript_name=ENST00000649520.1 ENST00000649186.1 NM_001321076.3 NM_001321077.3 AK299801 AK297346 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_189024.1 | |tss_id=rfhg_189024.1 | ||
Revision as of 15:53, 11 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2905587,EH38E1844106) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001321077 |
| Entrez ID: | 1742 |
| Nearest Unigene: | Hs.463928 |
| Nearest Refseq: | NM_001365 |
| Nearest Ensembl: | ENSG00000132535 |
| Gene Name: | DLG4 |
| Gene Alias: | PSD95|SAP-90|SAP90 |
| Gene Type: | protein-coding |
| CpG%: | 0.045455 |
| GC%: | 0.573034 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.